ImmuneSpaceR 1.27.1
  • Reference
  • Articles
    • An Introduction to the ImmuneSpaceR Package
    • Downloading Datasets with getDataset
    • Handling Expression Matrices with ImmuneSpaceR
    • interactive_netrc() Function Walkthrough
    • SDY144: Correlation of HAI/Virus Neutralizition Titer and Cell Counts
    • SDY180: Abundance of Plasmablasts Measured by Multiparameter Flow Cytometry
    • SDY269: Correlating HAI with Flow Cytometry and ELISPOT Results
  • Changelog

Reference

All functions

CreateConnection()

CreateConnection

ISpalette()

ImmuneSpace palette

ImmuneSpaceConnection ISCon listDatasets listGEMatrices listGEAnalysis listParticipantGroups listParticipantMatrices listWorkspaces listGatingSets summarizeCyto summarizeGatingSet loadGatingSet getDataset getGEMatrix getGEAnalysis getGEFiles getGEInputs getParticipantData getParticipantGEMatrix addTreatmentt mapSampleNames

The ImmuneSpaceConnection class

ImmuneSpaceR-package ImmuneSpaceR

A Thin Wrapper Around ImmuneSpace

check_netrc()

Check netrc file

interactive_netrc()

Interactively write a netrc file

loadConnection() saveConnection()

Save/Load an ImmuneSpaceConnection object from disk

template_IS()

template_IS

theme_IS()

theme_IS

write_netrc()

Write a netrc file

Contents

Developed by Greg Finak, Renan Sauteraud, Mike Jiang, Gil Guday, Leo Dashevskiy, Evan Henrich, Ju Yeong Kim, Lauren Wolfe, Helen Miller, Raphael Gottardo, ImmuneSpace Package Maintainer.

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