Plot a tree/graph representing the GatingHierarchy

plot(x,y, ...)

Arguments

x

GatingHierarchy or GatingSet. If GatingSet, the first sample will be used to extract gating tree.

y

missing or character specifies.

...

other arguments:

  • boolean: TRUE|FALSE logical specifying whether to plot boolean gate nodes. Defaults to FALSE.

  • showHidden: TRUE|FALSE logical whether to show hidden nodes

  • layout: See layoutGraph in package Rgraphviz

  • width: See layoutGraph in package Rgraphviz

  • height: See layoutGraph in package Rgraphviz

  • fontsize: See layoutGraph in package Rgraphviz

  • labelfontsize: See layoutGraph in package Rgraphviz

  • fixedsize: See layoutGraph in package Rgraphviz

Examples

if (FALSE) { #gs is a GatingSet plot(gs) # the same as plot(gs[[1]]) #plot a substree rooted from 'CD4' plot(gs, "CD4") }