gs_pop_get_count_fast.Rd
gs_pop_get_count_fast is more useful than getPop. Returns a table of population statistics for all populations in a GatingHierarchy
/GatingSet
. Includes the xml counts, openCyto counts and frequencies.
gs_pop_get_count_fast( x, statistic = c("count", "freq"), xml = FALSE, subpopulations = NULL, format = c("long", "wide"), path = "full", ... ) gs_pop_get_count_with_meta(x, ...)
x  a 

statistic 

xml 

subpopulations 

format 

path 

...  additional arguments passed to 
gs_pop_get_count_fast returns a data.frame
with columns for the population name, xml derived counts, openCyto derived counts, and the population proportions (relative to their parent pouplation).
a data.table
of merged population statistics with sample metadata.
gs_pop_get_count_fast returns a table population statistics for all populations in the gating hierarchy. The output is useful for verifying that the import was successful, if the xml and openCyto derived counts don't differ much (i.e. if they have a small coefficient of variation.) for a GatingSet, returns a matrix of proportions for all populations and all samples
if (FALSE) { #gh is a GatingHierarchy gs_pop_get_count_fast(gh); gh_pop_get_stats(gh,gs_get_pop_paths(gh,tsort=T)[5]) #gs is a GatingSet gs_pop_get_count_fast(gs) #optionally output in long format as a data.table gs_pop_get_count_fast(gs, format = "long", path = "auto") #only get stats for a subset of populations gs_pop_get_count_fast(gs, format = "long", subpopulations = gs_get_pop_paths(gs)[4:6]) } if (FALSE) { #G is a GatingSetList stats = gs_pop_get_count_with_meta(G) }