gh_pop_get_data.Rd
get gated flow data from a GatingHierarchy/GatingSet/GatingSetList
gh_pop_get_data(obj, y = "root", inverse.transform = FALSE, ...)
obj  A 

y 

inverse.transform  logical flag indicating whether to inverse transform the data 
...  arguments passed to ncdfFlow::[[ 
A flowFrame
object if obj
is a GatingHierarchy.
A flowSet
or ncdfFlowSet
if a GatingSet
.
A ncdfFlowList
if a GatingSetList
.
Returns a flowFrame/flowSet containing the events in the gate defined at node y
.
Subset membership can be obtained using gh_pop_get_indices
.
Population statistics can be obtained using getPop
and gh_pop_compare_stats
.
When calling gh_pop_get_data
on a GatingSet,the trees representing the GatingHierarchy for each sample in the GaingSet are presumed to have the same structure.
To update the data, use gs_cyto_data
method.
if (FALSE) { #G is a GatingSet geData(G,3) #get a flowSet constructed from the third node / population in the tree. geData(G,"cd4") #gh is a GatingHierarchy gh_pop_get_data(gh) }