Overview
The cytoverse is a set of packages that are commonly used for cytometry data analysis. The cytoverse package is designed to make it easy to install and load core packages from the cytoverse in a single command.
Installation
# Install from Bioconductor
BiocManager::install("cytoverse")
# Or the development version from GitHub
# install.packages("devtools")
devtools::install_github("RGLab/cytoverse")Usage
library(cytoverse) will load the core cytoverse packages:
- flowWorkspace, for gated data interaction.
- ggcyto, for data visualisation.
- openCyto, for auto gating.
- CytoML, for data analysis import/export through gatingML/xml.
library(cytoverse)
#> ── Attaching packages ───────────────────────────── cytoverse 0.0.0.9000 ──
#> ✔ flowCore 1.49.10 ✔ ggcyto 1.11.5
#> ✔ flowWorkspace 3.31.16 ✔ CytoML 1.9.6
#> ✔ openCyto 1.21.4